[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 5,782 items for (author: yang & z)

EMDB-39126:
Structure of the FADD/Caspase-8/cFLIP death effector domain assembly
Method: single particle / : Lin SC, Yang CY

EMDB-39127:
Structure of the FADD/Caspase-8/cFLIP death effector domain assembly
Method: single particle / : Lin SC, Yang CY

PDB-8ybx:
Structure of the FADD/Caspase-8/cFLIP death effector domain assembly
Method: single particle / : Lin SC, Yang CY

EMDB-36366:
Cryo-EM structure of Symbiodinium photosystem I
Method: single particle / : Zhao LS, Wang N, Li K, Zhang YZ, Liu LN

PDB-8jjr:
Cryo-EM structure of Symbiodinium photosystem I
Method: single particle / : Zhao LS, Wang N, Li K, Zhang YZ, Liu LN

EMDB-36776:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric apo state
Method: single particle / : Zhu HZ, Liu JJG

EMDB-36777:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron DR1 at symmetric pre-cleavage state
Method: single particle / : Zhu HZ, Liu JJG

EMDB-36778:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric post cleavge state
Method: single particle / : Zhu HZ, Liu JJG

EMDB-36786:
The Streptococcus azizii ORF-less Group IIC intron HYER2 at apo state
Method: single particle / : Zhu HZ, Liu JJG

PDB-8k0p:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric apo state
Method: single particle / : Zhu HZ, Liu JJG

PDB-8k0q:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric pre-cleavage state
Method: single particle / : Zhu HZ, Liu JJG

PDB-8k0r:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric post cleavge state
Method: single particle / : Zhu HZ, Liu JJG

PDB-8k15:
The Streptococcus azizii ORF-less Group IIC intron HYER2 at apo state
Method: single particle / : Zhu HZ, Liu JJG

EMDB-37727:
Cryo-ET structure of RuBisCO from 3.9 angstroms Synechococcus elongatus PCC 7942
Method: subtomogram averaging / : Kong WW, Jiang YL, Zhou CZ

EMDB-37728:
Cryo-ET map of RuBisCO at 4.4 angstroms from Synechococcus elongatus PCC 7942 beta-carboxysome
Method: subtomogram averaging / : Kong WW, Jiang YL, Zhou CZ

EMDB-37729:
Cryo-ET map of RuBisCO-SSUL at 5.9 angstroms from Synechococcus elongatus PCC 7942 beta-carboxysome
Method: subtomogram averaging / : Kong WW, Jiang YL, Zhou CZ

EMDB-37730:
Cryo-ET map of RuBisCO at the outermost layer that is loosely attached to the shell of Synechococcus elongatus PCC 7942 beta-carboxysome
Method: subtomogram averaging / : Kong WW, Jiang YL, Zhou CZ

EMDB-37731:
Cryo-ET map of RuBisCO at the outermost layer that is tightly attached to the shell of Synechococcus elongatus PCC 7942 beta-carboxysome
Method: subtomogram averaging / : Kong WW, Jiang YL, Zhou CZ

EMDB-39724:
A homotrimeric GPCR architecture of the human cytomegalovirus (UL78) revealed by cryo-EM
Method: single particle / : Chen Y, Li Y, Zhou Q, Cong Z, Lin S, Yan J, Chen X, Yang D, Ying T, Wang MW

PDB-8z1e:
A homotrimeric GPCR architecture of the human cytomegalovirus (UL78) revealed by cryo-EM
Method: single particle / : Chen Y, Li Y, Zhou Q, Cong Z, Lin S, Yan J, Chen X, Yang D, Ying T, Wang MW

EMDB-39916:
SARS-CoV-2 Omicron BA.1 spike trimer (x2-4P) in complex with 3 D1F6 Fabs (0 RBD up)
Method: single particle / : Liu B, Gao X, Li Z, Chen Q, He J, Xiong X

EMDB-39917:
SARS-CoV-2 Omicron BA.2 spike trimer (6P) in complex with 3 D1F6 Fabs (1 RBD up)
Method: single particle / : Liu B, Gao X, Li Z, Chen Q, He J, Xiong X

EMDB-39918:
SARS-CoV-2 Omicron BA.2 spike trimer (6P) in complex with 3 D1F6 Fabs (2 RBD up)
Method: single particle / : Liu B, Gao X, Li Z, Chen Q, He J, Xiong X

EMDB-39919:
SARS-CoV-2 Omicron BA.2 spike trimer (6P) in complex with D1F6 Fab, focused refinement of RBD region
Method: single particle / : Liu B, Gao X, Li Z, Chen Q, He J, Xiong X

EMDB-39921:
SARS-CoV-2 Omicron BA.4 spike trimer (6P) in complex with 3 D1F6 Fabs (1 RBD up)
Method: single particle / : Liu B, Gao X, Li Z, Chen Q, He J, Xiong X

EMDB-39922:
SARS-CoV-2 Omicron BA.4 spike trimer (6P) in complex with 3 D1F6 Fabs (2 RBD up)
Method: single particle / : Liu B, Gao X, Li Z, Chen Q, He J, Xiong X

EMDB-39923:
SARS-CoV-2 Omicron BA.4 spike trimer (6P) in complex with D1F6 Fab, focused refinement of RBD region
Method: single particle / : Liu B, Gao X, Li Z, Chen Q, He J, Xiong X

EMDB-36068:
Monkeypox virus DNA replication holoenzyme F8, A22 and E4 in complex with a DNA duplex and dCTP
Method: single particle / : Xu Y, Wu Y, Wu X, Zhang Y, Yang Y, Li D, Yang B, Gao K, Zhang Z, Dong C, Tang X, Dong H

EMDB-36069:
Monkeypox virus DNA replication holoenzyme F8, A22 and E4 in complex with a DNA duplex and cidofovir diphosphate
Method: single particle / : Xu Y, Wu Y, Wu X, Zhang Y, Yang Y, Li D, Yang B, Gao K, Zhang Z, Dong C, Tang X, Dong H

PDB-8j8f:
Monkeypox virus DNA replication holoenzyme F8, A22 and E4 in complex with a DNA duplex and dCTP
Method: single particle / : Xu Y, Wu Y, Wu X, Zhang Y, Yang Y, Li D, Yang B, Gao K, Zhang Z, Dong C

PDB-8j8g:
Monkeypox virus DNA replication holoenzyme F8, A22 and E4 in complex with a DNA duplex and cidofovir diphosphate
Method: single particle / : Xu Y, Wu Y, Wu X, Zhang Y, Yang Y, Li D, Yang B, Gao K, Zhang Z, Dong C

EMDB-36980:
Cryo-EM structure of DSR2-TTP
Method: single particle / : Zhang H, Li Z, Li XZ

EMDB-36982:
Cryo-EM structure of DSR2-DSAD1 state 2
Method: single particle / : Zhang H, Li Z, Li XZ

EMDB-37272:
Cryo-EM structure of DSR2-DSAD1 state 1
Method: single particle / : Zhang H, Li Z, Li XZ

EMDB-37603:
Cryo-EM structure of DSR2-DSAD1
Method: single particle / : Zhang H, Li Z, Li XZ

EMDB-38421:
Cryo-EM structure of tail tube protein
Method: single particle / : Zhang H, Li Z, Li XZ

PDB-8k98:
Cryo-EM structure of DSR2-TTP
Method: single particle / : Zhang H, Li Z, Li XZ

PDB-8k9a:
Cryo-EM structure of DSR2-DSAD1 state 2
Method: single particle / : Zhang H, Li Z, Li XZ

PDB-8w56:
Cryo-EM structure of DSR2-DSAD1 state 1
Method: single particle / : Zhang H, Li Z, Li XZ

PDB-8wkn:
Cryo-EM structure of DSR2-DSAD1
Method: single particle / : Zhang H, Li Z, Li XZ

PDB-8xkn:
Cryo-EM structure of tail tube protein
Method: single particle / : Zhang H, Li Z, Li XZ

EMDB-36779:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 with 10-nt TRS at symmetric apo state
Method: single particle / : Zhu HZ, Liu JJG

PDB-8k0s:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 with 10-nt TRS at symmetric apo state
Method: single particle / : Zhu HZ, Liu JJG

EMDB-36061:
Monkeypox virus DNA replication holoenzyme F8, A22 and E4 complex in a DNA binding form
Method: single particle / : Xu Y, Wu Y, Wu X, Zhang Y, Yang Y, Li D, Yang B, Gao K, Zhang Z, Dong C, Tang X, Dong H

PDB-8j86:
Monkeypox virus DNA replication holoenzyme F8, A22 and E4 complex in a DNA binding form
Method: single particle / : Xu Y, Wu Y, Wu X, Zhang Y, Yang Y, Li D, Yang B, Gao K, Zhang Z, Dong C

EMDB-35042:
Cryo-EM structure of the the 2-oxoglutarate dehydrogenase (E1) with TCAIM complex
Method: single particle / : Yu X, Yang W

PDB-8i0k:
Cryo-electron microscopic structure of the 2-oxoglutarate dehydrogenase(E1) with TCAIM complex
Method: single particle / : Yu X, Yang W, Zhong YH, Ma XM, Gao YZ

EMDB-36594:
Cryo-EM structure of a designed AAV8-based vector
Method: single particle / : Ke X, Luo S, Zheng Q, Jiang H, Liu F, Sun X

PDB-8jre:
Cryo-EM structure of a designed AAV8-based vector
Method: single particle / : Ke X, Luo S, Zheng Q, Jiang H, Liu F, Sun X

EMDB-41314:
Structure of Gabija AB complex
Method: single particle / : Shen ZF, Yang XY, Fu TM

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more